Is an integrated ontology file available?

colin.goldberg
colin.goldberg Newcomer
in Open PermID

Hi,

For the purpose of my new application, I would like to be able to import a PermID ontology file - in OWL or other format (say, acceptable to Protege), containing the (major) entities - Organization, Person, etc. integrated into one file.

Is this file available?

Regards

Colin Goldberg

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Best Answer

  • Jirapongse
    Jirapongse ✭✭✭✭✭
    Answer ✓

    The information about the Ontologies used by permid.org are available under the “Ontologies” section of https://permid.org/terms.

    image

    If you have any further questions, please let us know.

Answers

  • colin.goldberg
    colin.goldberg Newcomer

    Thank you for your response. However, I see individual files on
    this page, but not a single integrated file. Is this available? If
    not, is any help available about how to combine these files into a
    single one - eg. using Protege or similar software.

    Regards

    Colin Goldberg

  • Jirapongse
    Jirapongse ✭✭✭✭✭

    @colin.goldberg

    No integrated file is available and there are no
    current plans to implement this.

    I have tried with Protege but it doesn't work. Protege seems to have a problem with non-exact cardinality in OQL restrictions. Therefore, you could try to combine all the files into one and remove the import declarations and redundant prefixes.

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