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Question by colin.goldberg · May 14, 2018 at 09:29 AM · pythonintelligent-tagging-apipermid-apiopen-permid-api

Is an integrated ontology file available?

Hi,

For the purpose of my new application, I would like to be able to import a PermID ontology file - in OWL or other format (say, acceptable to Protege), containing the (major) entities - Organization, Person, etc. integrated into one file.

Is this file available?

Regards

Colin Goldberg

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Answer by Jirapongse · May 17, 2018 at 05:39 AM

The information about the Ontologies used by permid.org are available under the “Ontologies” section of https://permid.org/terms.

If you have any further questions, please let us know.


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Answer by colin.goldberg · May 18, 2018 at 11:27 AM

Thank you for your response. However, I see individual files on this page, but not a single integrated file. Is this available? If not, is any help available about how to combine these files into a single one - eg. using Protege or similar software.

Regards

Colin Goldberg

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Answer by Jirapongse · May 30, 2018 at 06:29 AM

@c3eaf78c-5e01-410a-93af-ded2de9a315d

No integrated file is available and there are no current plans to implement this.

I have tried with Protege but it doesn't work. Protege seems to have a problem with non-exact cardinality in OQL restrictions. Therefore, you could try to combine all the files into one and remove the import declarations and redundant prefixes.

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